- Documentation
- Examples
- Source
MultiCell
a platform for high-detail morphological simulations of motile cell crowds
🚀Fast
1000-10,0000x faster on GPU than serial cellular Potts models
⚙️Usable
simple API integrated with scientific Python ecosystem
🦠Motility Models
several validated cell motility models, from intracellular dynamics to ABM derived models
> pip install multicell
import multicell as mc
sim = mc.Cpm3d(dimension=256,
nr_of_types=2, temperature=20)
for x in range(0, dimension, 10):
for y in range(0, dimension, 10):
for z in range(0, dimension, 10):
# add cell with type 1
sim.add_cell(x,y,z, 1)
sim.set_constraints(cell_type = 1,
target_area = 150, lambda_area = 25)
sim.set_constraints(cell_type = 1,
lambda_perimeter = .2, target_perimeter = 1500)
sim.set_constraints(cell_type = 1, other_cell_type = 1,
adhesion = 10)
sim.set_constraints(cell_type = 0, other_cell_type = 1,
adhesion = 10)